Clc main workbench tutorial aligment to reference

#CLC MAIN WORKBENCH TUTORIAL ALIGMENT TO REFERENCE HOW TO#
#CLC MAIN WORKBENCH TUTORIAL ALIGMENT TO REFERENCE INSTALL#
#CLC MAIN WORKBENCH TUTORIAL ALIGMENT TO REFERENCE SOFTWARE#
#CLC MAIN WORKBENCH TUTORIAL ALIGMENT TO REFERENCE PASSWORD#
#CLC MAIN WORKBENCH TUTORIAL ALIGMENT TO REFERENCE DOWNLOAD#

For all other tasks that can be achieved with the CLC genomics workbench client, it works the same way.

#CLC MAIN WORKBENCH TUTORIAL ALIGMENT TO REFERENCE HOW TO#

Submitting jobs from the CLC genomics workbench clientДЄs an example for demonstrating how to submit a job from the CLC genomics workbench client to the Euler cluster, we choose a BLAST search. Mounting NAS shares from the IT services storage group been tested on Euler and should work. For this, one has to click on a file in the local CLC data location and move it to the server data location that is attached to each CLC genomics server account. On one hand, the data can directly be imported into the CLC genomics workbench client and then be moved to the server data location by drag-and-drop within the client. In general there are two different ways of importing data to a server data location. Please note that there is no backup for these data sets. After the jobs have finished, the results should be copied back on a local machine or any other storage location. Unless a user owns some permanent space in Euler, the server data locations are considered as scratch space that can be used for temporary storage of data and will be purged on a regular basis. Therefore we attach a server data location (one folder) to each CLC genomics server account that is created on Euler. The user data that is processed by the CLC genomics server installation on Euler first needs to be imported into the server. You will only be able to see and use the content of your own data location (unless you explicitly ask us to change the permissions in case you would like to share data with other users). When connected to the CLC genomics server, you will be able to see all server data locations (the folder with a blue dot next to them) but not their content. Then click on the Login buttonДЄfter the login procedure, the server data locations are displayed in the Navigation Area menu.

Click on 'Advanced' and enter as server host and 7777 as server port.

#CLC MAIN WORKBENCH TUTORIAL ALIGMENT TO REFERENCE PASSWORD#

Enter the username, password of your CLC genomics server account.

Open the File menu and click on the entry CLC Server Login.

Open the CLC genomics workbench client (first only the local data is shown in the menu at the top left).

The CLC genomics server on Euler is running in a virtual machine and the clients can directly connect to this virtual machine.

For requesting an account, please contact to the CLC genomics server from the CLC genomics workbench clientДЇor connecting the CLC genomics workbench client to the CLC genomics server, an SSH-tunnel is no longer required.

#CLC MAIN WORKBENCH TUTORIAL ALIGMENT TO REFERENCE DOWNLOAD#

Click on the Download Plug-ins tab and choose the CLC workbench client plugin and click on Download and InstallДЄs a last requirement you need to request a CLC genomics server account.

Start the CLC genomics workbench (on Windows computers you have to start it as administrator, i.e., right-click the CLC genomics icon and choose run as administrator).

#CLC MAIN WORKBENCH TUTORIAL ALIGMENT TO REFERENCE INSTALL#

Furthermore, you need to install the CLC workbench client plugin, that is used for the communication between the CLC genomics workbench and the CLC genomics server.

First of all, you need an installation of the CLC genomics workbench client on your local computer. Requirements for using the CLC genomics serverДЇor using the CLC genomics server installation on Euler, certain requirements need to be fulfilled. Workbench versions compatible with genomics server If you would like to use this service, then please contact cluster support to request your CLC account. The CLC genomics server uses local accounts for authentication. With a single click within CLC Genomics Workbench it is possible to offload resource-demanding tasks to an HPC cluster, that would not possible to analyse in a desktop computer environment. It contains the same tools as the CLC Genomics Workbench, such as mapping of reads to a known reference, de novo assembly, and variant calling.

#CLC MAIN WORKBENCH TUTORIAL ALIGMENT TO REFERENCE SOFTWARE#

11 Documentation on the CLC Genomics WorkbenchД¬LC Genomics Server is a software solution for centralized bioinformatics analysis and sharing of data generated from all High-Throughput Sequencing platforms.7 Submitting jobs from the CLC genomics workbench client.5.2 Connecting to the server via the web interface.5.1 Connecting the client to the server.5 Login to the CLC genomics server from the CLC genomics workbench client.4 Requirements for using the CLC genomics server.3 Workbench versions compatible with genomics server.

Clc main workbench tutorial aligment to reference